# Copyright The Lightning team. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from typing import Any, List, Optional, Sequence, Union from torch import Tensor from typing_extensions import Literal from torchmetrics.classification.base import _ClassificationTaskWrapper from torchmetrics.classification.precision_recall_curve import ( BinaryPrecisionRecallCurve, MulticlassPrecisionRecallCurve, MultilabelPrecisionRecallCurve, ) from torchmetrics.functional.classification.average_precision import ( _binary_average_precision_compute, _multiclass_average_precision_arg_validation, _multiclass_average_precision_compute, _multilabel_average_precision_arg_validation, _multilabel_average_precision_compute, ) from torchmetrics.metric import Metric from torchmetrics.utilities.data import dim_zero_cat from torchmetrics.utilities.enums import ClassificationTask from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE from torchmetrics.utilities.plot import _AX_TYPE, _PLOT_OUT_TYPE if not _MATPLOTLIB_AVAILABLE: __doctest_skip__ = [ "BinaryAveragePrecision.plot", "MulticlassAveragePrecision.plot", "MultilabelAveragePrecision.plot", ] class BinaryAveragePrecision(BinaryPrecisionRecallCurve): r"""Compute the average precision (AP) score for binary tasks. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum_{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). As input to ``forward`` and ``update`` the metric accepts the following input: - ``preds`` (:class:`~torch.Tensor`): A float tensor of shape ``(N, ...)`` containing probabilities or logits for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per element. - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)`` containing ground truth labels, and therefore only contain {0,1} values (except if `ignore_index` is specified). The value 1 always encodes the positive class. As output to ``forward`` and ``compute`` the metric returns the following output: - ``bap`` (:class:`~torch.Tensor`): A single scalar with the average precision score Additional dimension ``...`` will be flattened into the batch dimension. The implementation both supports calculating the metric in a non-binned but accurate version and a binned version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of size :math:`\mathcal{O}(n_{thresholds})` (constant memory). Args: thresholds: Can be one of: - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from all the data. Most accurate but also most memory consuming approach. - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from 0 to 1 as bins for the calculation. - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as bins for the calculation. validate_args: bool indicating if input arguments and tensors should be validated for correctness. Set to ``False`` for faster computations. kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info. Example: >>> from torch import tensor >>> from torchmetrics.classification import BinaryAveragePrecision >>> preds = tensor([0, 0.5, 0.7, 0.8]) >>> target = tensor([0, 1, 1, 0]) >>> metric = BinaryAveragePrecision(thresholds=None) >>> metric(preds, target) tensor(0.5833) >>> bap = BinaryAveragePrecision(thresholds=5) >>> bap(preds, target) tensor(0.6667) """ is_differentiable: bool = False higher_is_better: bool = True full_state_update: bool = False plot_lower_bound: float = 0.0 plot_upper_bound: float = 1.0 def compute(self) -> Tensor: # type: ignore[override] """Compute metric.""" state = (dim_zero_cat(self.preds), dim_zero_cat(self.target)) if self.thresholds is None else self.confmat return _binary_average_precision_compute(state, self.thresholds) def plot( # type: ignore[override] self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None ) -> _PLOT_OUT_TYPE: """Plot a single or multiple values from the metric. Args: val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results. If no value is provided, will automatically call `metric.compute` and plot that result. ax: An matplotlib axis object. If provided will add plot to that axis Returns: Figure and Axes object Raises: ModuleNotFoundError: If `matplotlib` is not installed .. plot:: :scale: 75 >>> # Example plotting a single >>> import torch >>> from torchmetrics.classification import BinaryAveragePrecision >>> metric = BinaryAveragePrecision() >>> metric.update(torch.rand(20,), torch.randint(2, (20,))) >>> fig_, ax_ = metric.plot() .. plot:: :scale: 75 >>> # Example plotting multiple values >>> import torch >>> from torchmetrics.classification import BinaryAveragePrecision >>> metric = BinaryAveragePrecision() >>> values = [ ] >>> for _ in range(10): ... values.append(metric(torch.rand(20,), torch.randint(2, (20,)))) >>> fig_, ax_ = metric.plot(values) """ return self._plot(val, ax) class MulticlassAveragePrecision(MulticlassPrecisionRecallCurve): r"""Compute the average precision (AP) score for multiclass tasks. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum_{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). As input to ``forward`` and ``update`` the metric accepts the following input: - ``preds`` (:class:`~torch.Tensor`): A float tensor of shape ``(N, C, ...)`` containing probabilities or logits for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply softmax per sample. - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)`` containing ground truth labels, and therefore only contain values in the [0, n_classes-1] range (except if `ignore_index` is specified). As output to ``forward`` and ``compute`` the metric returns the following output: - ``mcap`` (:class:`~torch.Tensor`): If `average=None|"none"` then a 1d tensor of shape (n_classes, ) will be returned with AP score per class. If `average="macro"|"weighted"` then a single scalar is returned. Additional dimension ``...`` will be flattened into the batch dimension. The implementation both supports calculating the metric in a non-binned but accurate version and a binned version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of size :math:`\mathcal{O}(n_{thresholds} \times n_{classes})` (constant memory). Args: num_classes: Integer specifing the number of classes average: Defines the reduction that is applied over classes. Should be one of the following: - ``macro``: Calculate score for each class and average them - ``weighted``: calculates score for each class and computes weighted average using their support - ``"none"`` or ``None``: calculates score for each class and applies no reduction thresholds: Can be one of: - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from all the data. Most accurate but also most memory consuming approach. - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from 0 to 1 as bins for the calculation. - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as bins for the calculation. validate_args: bool indicating if input arguments and tensors should be validated for correctness. Set to ``False`` for faster computations. kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info. Example: >>> from torch import tensor >>> from torchmetrics.classification import MulticlassAveragePrecision >>> preds = tensor([[0.75, 0.05, 0.05, 0.05, 0.05], ... [0.05, 0.75, 0.05, 0.05, 0.05], ... [0.05, 0.05, 0.75, 0.05, 0.05], ... [0.05, 0.05, 0.05, 0.75, 0.05]]) >>> target = tensor([0, 1, 3, 2]) >>> metric = MulticlassAveragePrecision(num_classes=5, average="macro", thresholds=None) >>> metric(preds, target) tensor(0.6250) >>> mcap = MulticlassAveragePrecision(num_classes=5, average=None, thresholds=None) >>> mcap(preds, target) tensor([1.0000, 1.0000, 0.2500, 0.2500, nan]) >>> mcap = MulticlassAveragePrecision(num_classes=5, average="macro", thresholds=5) >>> mcap(preds, target) tensor(0.5000) >>> mcap = MulticlassAveragePrecision(num_classes=5, average=None, thresholds=5) >>> mcap(preds, target) tensor([1.0000, 1.0000, 0.2500, 0.2500, -0.0000]) """ is_differentiable: bool = False higher_is_better: bool = True full_state_update: bool = False plot_lower_bound: float = 0.0 plot_upper_bound: float = 1.0 plot_legend_name: str = "Class" def __init__( self, num_classes: int, average: Optional[Literal["macro", "weighted", "none"]] = "macro", thresholds: Optional[Union[int, List[float], Tensor]] = None, ignore_index: Optional[int] = None, validate_args: bool = True, **kwargs: Any, ) -> None: super().__init__( num_classes=num_classes, thresholds=thresholds, ignore_index=ignore_index, validate_args=False, **kwargs ) if validate_args: _multiclass_average_precision_arg_validation(num_classes, average, thresholds, ignore_index) self.average = average self.validate_args = validate_args def compute(self) -> Tensor: # type: ignore[override] """Compute metric.""" state = (dim_zero_cat(self.preds), dim_zero_cat(self.target)) if self.thresholds is None else self.confmat return _multiclass_average_precision_compute(state, self.num_classes, self.average, self.thresholds) def plot( # type: ignore[override] self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None ) -> _PLOT_OUT_TYPE: """Plot a single or multiple values from the metric. Args: val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results. If no value is provided, will automatically call `metric.compute` and plot that result. ax: An matplotlib axis object. If provided will add plot to that axis Returns: Figure and Axes object Raises: ModuleNotFoundError: If `matplotlib` is not installed .. plot:: :scale: 75 >>> # Example plotting a single >>> import torch >>> from torchmetrics.classification import MulticlassAveragePrecision >>> metric = MulticlassAveragePrecision(num_classes=3) >>> metric.update(torch.randn(20, 3), torch.randint(3,(20,))) >>> fig_, ax_ = metric.plot() .. plot:: :scale: 75 >>> # Example plotting multiple values >>> import torch >>> from torchmetrics.classification import MulticlassAveragePrecision >>> metric = MulticlassAveragePrecision(num_classes=3) >>> values = [ ] >>> for _ in range(10): ... values.append(metric(torch.randn(20, 3), torch.randint(3, (20,)))) >>> fig_, ax_ = metric.plot(values) """ return self._plot(val, ax) class MultilabelAveragePrecision(MultilabelPrecisionRecallCurve): r"""Compute the average precision (AP) score for multilabel tasks. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum_{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). As input to ``forward`` and ``update`` the metric accepts the following input: - ``preds`` (:class:`~torch.Tensor`): A float tensor of shape ``(N, C, ...)`` containing probabilities or logits for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per element. - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, C, ...)`` containing ground truth labels, and therefore only contain {0,1} values (except if `ignore_index` is specified). As output to ``forward`` and ``compute`` the metric returns the following output: - ``mlap`` (:class:`~torch.Tensor`): If `average=None|"none"` then a 1d tensor of shape (n_classes, ) will be returned with AP score per class. If `average="micro|macro"|"weighted"` then a single scalar is returned. Additional dimension ``...`` will be flattened into the batch dimension. The implementation both supports calculating the metric in a non-binned but accurate version and a binned version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of size :math:`\mathcal{O}(n_{thresholds} \times n_{labels})` (constant memory). Args: num_labels: Integer specifing the number of labels average: Defines the reduction that is applied over labels. Should be one of the following: - ``micro``: Sum score over all labels - ``macro``: Calculate score for each label and average them - ``weighted``: calculates score for each label and computes weighted average using their support - ``"none"`` or ``None``: calculates score for each label and applies no reduction thresholds: Can be one of: - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from all the data. Most accurate but also most memory consuming approach. - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from 0 to 1 as bins for the calculation. - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as bins for the calculation. validate_args: bool indicating if input arguments and tensors should be validated for correctness. Set to ``False`` for faster computations. kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info. Example: >>> from torch import tensor >>> from torchmetrics.classification import MultilabelAveragePrecision >>> preds = tensor([[0.75, 0.05, 0.35], ... [0.45, 0.75, 0.05], ... [0.05, 0.55, 0.75], ... [0.05, 0.65, 0.05]]) >>> target = tensor([[1, 0, 1], ... [0, 0, 0], ... [0, 1, 1], ... [1, 1, 1]]) >>> metric = MultilabelAveragePrecision(num_labels=3, average="macro", thresholds=None) >>> metric(preds, target) tensor(0.7500) >>> mlap = MultilabelAveragePrecision(num_labels=3, average=None, thresholds=None) >>> mlap(preds, target) tensor([0.7500, 0.5833, 0.9167]) >>> mlap = MultilabelAveragePrecision(num_labels=3, average="macro", thresholds=5) >>> mlap(preds, target) tensor(0.7778) >>> mlap = MultilabelAveragePrecision(num_labels=3, average=None, thresholds=5) >>> mlap(preds, target) tensor([0.7500, 0.6667, 0.9167]) """ is_differentiable: bool = False higher_is_better: bool = True full_state_update: bool = False plot_lower_bound: float = 0.0 plot_upper_bound: float = 1.0 plot_legend_name: str = "Label" def __init__( self, num_labels: int, average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro", thresholds: Optional[Union[int, List[float], Tensor]] = None, ignore_index: Optional[int] = None, validate_args: bool = True, **kwargs: Any, ) -> None: super().__init__( num_labels=num_labels, thresholds=thresholds, ignore_index=ignore_index, validate_args=False, **kwargs ) if validate_args: _multilabel_average_precision_arg_validation(num_labels, average, thresholds, ignore_index) self.average = average self.validate_args = validate_args def compute(self) -> Tensor: # type: ignore[override] """Compute metric.""" state = (dim_zero_cat(self.preds), dim_zero_cat(self.target)) if self.thresholds is None else self.confmat return _multilabel_average_precision_compute( state, self.num_labels, self.average, self.thresholds, self.ignore_index ) def plot( # type: ignore[override] self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None ) -> _PLOT_OUT_TYPE: """Plot a single or multiple values from the metric. Args: val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results. If no value is provided, will automatically call `metric.compute` and plot that result. ax: An matplotlib axis object. If provided will add plot to that axis Returns: Figure and Axes object Raises: ModuleNotFoundError: If `matplotlib` is not installed .. plot:: :scale: 75 >>> # Example plotting a single >>> import torch >>> from torchmetrics.classification import MultilabelAveragePrecision >>> metric = MultilabelAveragePrecision(num_labels=3) >>> metric.update(torch.rand(20,3), torch.randint(2, (20,3))) >>> fig_, ax_ = metric.plot() .. plot:: :scale: 75 >>> # Example plotting multiple values >>> import torch >>> from torchmetrics.classification import MultilabelAveragePrecision >>> metric = MultilabelAveragePrecision(num_labels=3) >>> values = [ ] >>> for _ in range(10): ... values.append(metric(torch.rand(20,3), torch.randint(2, (20,3)))) >>> fig_, ax_ = metric.plot(values) """ return self._plot(val, ax) class AveragePrecision(_ClassificationTaskWrapper): r"""Compute the average precision (AP) score. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum_{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). This function is a simple wrapper to get the task specific versions of this metric, which is done by setting the ``task`` argument to either ``'binary'``, ``'multiclass'`` or ``multilabel``. See the documentation of :class:`~torchmetrics.classification.BinaryAveragePrecision`, :class:`~torchmetrics.classification.MulticlassAveragePrecision` and :class:`~torchmetrics.classification.MultilabelAveragePrecision` for the specific details of each argument influence and examples. Legacy Example: >>> from torch import tensor >>> pred = tensor([0, 0.1, 0.8, 0.4]) >>> target = tensor([0, 1, 1, 1]) >>> average_precision = AveragePrecision(task="binary") >>> average_precision(pred, target) tensor(1.) >>> pred = tensor([[0.75, 0.05, 0.05, 0.05, 0.05], ... [0.05, 0.75, 0.05, 0.05, 0.05], ... [0.05, 0.05, 0.75, 0.05, 0.05], ... [0.05, 0.05, 0.05, 0.75, 0.05]]) >>> target = tensor([0, 1, 3, 2]) >>> average_precision = AveragePrecision(task="multiclass", num_classes=5, average=None) >>> average_precision(pred, target) tensor([1.0000, 1.0000, 0.2500, 0.2500, nan]) """ def __new__( # type: ignore[misc] cls, task: Literal["binary", "multiclass", "multilabel"], thresholds: Optional[Union[int, List[float], Tensor]] = None, num_classes: Optional[int] = None, num_labels: Optional[int] = None, average: Optional[Literal["macro", "weighted", "none"]] = "macro", ignore_index: Optional[int] = None, validate_args: bool = True, **kwargs: Any, ) -> Metric: """Initialize task metric.""" task = ClassificationTask.from_str(task) kwargs.update({"thresholds": thresholds, "ignore_index": ignore_index, "validate_args": validate_args}) if task == ClassificationTask.BINARY: return BinaryAveragePrecision(**kwargs) if task == ClassificationTask.MULTICLASS: if not isinstance(num_classes, int): raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`") return MulticlassAveragePrecision(num_classes, average, **kwargs) if task == ClassificationTask.MULTILABEL: if not isinstance(num_labels, int): raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`") return MultilabelAveragePrecision(num_labels, average, **kwargs) raise ValueError(f"Task {task} not supported!")